Volume 5 Supplement 1

8th German Conference on Chemoinformatics: 26 CIC-Workshop

Open Access

Towards a complete structure of the hERG channel

  • Peter Schmidtke1Email author,
  • Ciantar Marine1,
  • Isabelle Theret1 and
  • Pierre Ducrot1
Journal of Cheminformatics20135(Suppl 1):P7

DOI: 10.1186/1758-2946-5-S1-P7

Published: 22 March 2013

A lot of attention has been drawn to the voltage gated potassium channel Kv11.1 during the last decades. In the past, both, ligand and structure based methods intended to predict if a small molecule could cause fatal heart arrhythmias, "torsades de pointe" and sudden death. However, despite the wide interest for hERG, still no experimental 3D structure is available and therefore homology modelling of parts of the channel (generally only the pore domain) is currently used to gain structural insights [1].

Here a novel structural model of hERG is presented encompassing the full transmembrane segment of hERG, including the conduction pore and the voltage sensitive domain. Furthermore, cytoplasmic domains like the cyclic nucleotide binding domain and the PAS domain have been positioned in the overall structure. Subsequent molecular dynamics simulations allow gaining novel structural and dynamic insights into hERG functioning and perturbation.

Authors’ Affiliations

(1)
Institut de Recherche Servier

References

  1. Cheng YM, Claydon TW: Voltage-Dependent Gating of hERG Potassium Channels. Front Pharmacol. 2012, 3: 83-View ArticleGoogle Scholar

Copyright

© Schmidtke et al.; licensee BioMed Central Ltd. 2013

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.